In the the previous post I discussed the integration of OpenCL into Processing by means of its library mechanism. An early version of a new OpenCL-physics library, based on traer.physics, was used to simulate a couple of particle systems in real-time (N-Body and Springs). An interesting application of these new methodologies is to carry out [...]

In earlier posts I talked about using Processing to create Cytoscape plugins, and also about the new OpenGL rendering engine for Processing, OPENGL2. This engine introduces several improvements over the original OPENGL renderer, and it is already available in the latest pre-release of Processing, 0194. A few days ago, I put together a simple template project [...]

Cytoscape is a cross-platform, open source application for visualization and analysis of networks. It is widely used in the field of Systems Biology to visualize different types of biological networks (like protein-protein interactions). It also has a plugin mechanism for extending its core functionality. Cytoscape is written in Java, so this open the possibility of [...]