Archive for the ‘network’ Tag

Using Processing to create Cytoscape plugins   4 comments

Cytoscape is a cross-platform, open source application for visualization and analysis of networks. It is widely used in the field of Systems Biology to visualize different types of biological networks (like protein-protein interactions). It also has a plugin mechanism for extending its core functionality. Cytoscape is written in Java, so this open the possibility of using Processing to create Cytoscape plugins. I just put together a small template for creating Processing plugins for Cytoscape using Eclipse, keep reading for more details.

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Posted March 17, 2011 by ac in Programming, Science, Visualization

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Visualization of del.icio.us accounts   Leave a comment

I just created an account on 6pli, which is an application to create visual, networked representations of all the links in a del.icio.us account. It also allows to navigate through the links and open the pages they refer to.

This is the visualization of my links: http://www.6pli.com/codeanticode

It was created by the artistic collective bestiario.

Posted June 4, 2008 by ac in Visualization

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